Monopogen

Category

Software & Systems

Subcategory

unknown

License

GPL-3.0(osi)

Status

dormant

Maturity

deployed

Organization

KChen-lab

Country

unknown

Homepage

unknown

Repository

github.com/KChen-lab/Monopogen

Documentation

unknown

Tags

germline-variants · single-cell · snvs · somatic-variants

Regulatory

unknown

• jinzhuangdou
• monoplasty
• ywangaz

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

• octopussingle-cell · somatic-variants

  Bayesian haplotype-based mutation calling

• CANCER_VAR_CALLsomatic-variants

  End-to-end somatic and germline variant calling pipeline using BWA, GATK HaplotypeCaller, VEP and ANNOVAR for tumor NGS analysis

• neusomaticsomatic-variants

  NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection

• nRexsomatic-variants

  nRex: Germline and somatic single-nucleotide, short indel and structural variant calling

• OctopuSVsomatic-variants

  Merge and compare structural variants across callers, samples, and platforms. Standardizes BND-heavy output from GRIDSS, SvABA, Sniffles, and more.

• Pipelines_Inmegensomatic-variants

  Flujos de trabajos desarrollados y automatizados en el Intituto Nacional de Medicina Genómica para el procesamiento de datos genómicos y transcriptómicos.

1. api.github.com/repos/KChen-lab/Monopogen
   retrieved 2026-08-05 · via github-api

   Machine-imported from GitHub search. Last push 2024-11-11, 120 stars, license reported as GPL-3.0. Category and schematic were assigned by keyword heuristics and are unreviewed.

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/v1/entries/15.json→ .entries["monopogen"]

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