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CANCER_VAR_CALL

imported

software/cancer-var-call

End-to-end somatic and germline variant calling pipeline using BWA, GATK HaplotypeCaller, VEP and ANNOVAR for tumor NGS analysis

Machine-generated from the listed sources and not yet reviewed by a human.

CANCER_VAR_CALL project image
GitHub preview card for rvrane/CANCER_VAR_CALL. Served by its origin, not stored here, and not covered by this registry’s licence.
record
Category
Software & Systems
Subcategory
unknown
License
MIT(osi)
Status
dormant
Maturity
deployed
Organization
unknown
Country
unknown
Homepage
unknown
Repository
github.com/rvrane/CANCER_VAR_CALL
Documentation
unknown
Tags
annovar · bioinformatics · bwa · cancer-genomics · gatk · ngs · oncology · somatic-variants
Regulatory
unknown
built by · 2

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

similar by tags

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

  • SigProfilerExtractorbioinformatics · cancer-genomics · somatic-variants

    SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in…

  • SigProfilerMatrixGeneratorbioinformatics · cancer-genomics · somatic-variants

    SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED…

  • CalliNGS-NFbioinformatics · gatk · ngs

    GATK RNA-Seq Variant Calling in Nextflow

  • gatkbioinformatics · gatk · ngs

    Official code repository for GATK versions 4 and up

  • GermlineEnrichmentbioinformatics · gatk · ngs

    Variant calling pipeline for germline enrichment NGS data

  • OctopuSVcancer-genomics · somatic-variants

    Merge and compare structural variants across callers, samples, and platforms. Standardizes BND-heavy output from GRIDSS, SvABA, Sniffles, and more.

sources
  1. api.github.com/repos/rvrane/CANCER_VAR_CALL
    retrieved 2026-08-05 · via github-api

    Machine-imported from GitHub search. Last push 2024-05-03, 3 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.

Not yet verified by a human. Correct this record →

machine-readable

/v1/entries/60.json→ .entries["cancer-var-call"]

Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.