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pyrodigal

imported

software/pyrodigal

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

Machine-generated from the listed sources and not yet reviewed by a human.

pyrodigal project image
GitHub preview card for althonos/pyrodigal. Served by its origin, not stored here, and not covered by this registry’s licence.
record
Category
Software & Systems
Subcategory
unknown
License
GPL-3.0(osi)
Status
active
Maturity
deployed
Organization
unknown
Country
unknown
Homepage
pyrodigal.readthedocs.org
Repository
github.com/althonos/pyrodigal
Documentation
unknown
Tags
bioconda · bioinformatics · cython-wrapper · gene-finding · genome · metagenomes · orf-finder · prodigal · python · python-interface · python-library · simd
Regulatory
unknown
built by · 6

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

similar by tags

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

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    SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.

  • cute-nucleotidesbioinformatics · simd

    Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.

  • lightmotifbioinformatics · simd

    A lightweight platform-accelerated library for biological motif scanning using position weight matrices.

  • bioinfo-notebookbioconda · bioinformatics

    🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.

sources
  1. api.github.com/repos/althonos/pyrodigal
    retrieved 2026-08-25 · via github-api

    Machine-imported from GitHub search. Last push 2026-03-17, 190 stars, license reported as GPL-3.0. Category and schematic were assigned by keyword heuristics and are unreviewed.

Not yet verified by a human. Correct this record →

machine-readable

/v1/entries/14.json→ .entries["pyrodigal"]

Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.