salmon
importedsoftware/salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- BSD-3-Clause(osi)
- Status
- active
- Maturity
- deployed
- Organization
- COMBINE-lab
- Country
- unknown
- Homepage
- combine-lab.github.io/salmon
- Repository
- github.com/COMBINE-lab/salmon
- Documentation
- unknown
- Tags
- bioinformatics · c-plus-plus · gene-expression · quantification · quasi-mapping · rna-seq · rna-seq-quantification · rnaseq
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- helicalbioinformatics · gene-expression · rna-seq · rnaseq
A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.
- cell2cellbioinformatics · rna-seq · rnaseq
User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
- RNAlysisbioinformatics · rna-seq · rnaseq
Analyze your RNA sequencing data without writing a single line of code
- rnaseqcbioinformatics · rna-seq · rnaseq
Fast, efficient RNA-Seq metrics for quality control and process optimization
- alevin-fryquantification · rna-seq
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
- DTUrtlerna-seq · rnaseq
Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:
- api.github.com/repos/COMBINE-lab/salmonretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2026-08-04, 924 stars, license reported as BSD-3-Clause. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/31.json→ .entries["salmon"]
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