SigProfilerExtractor
importedsoftware/sigprofilerextractor
SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in…
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- BSD-2-Clause(osi)
- Status
- active
- Maturity
- deployed
- Organization
- SigProfilerSuite
- Country
- unknown
- Homepage
- unknown
- Documentation
- unknown
- Tags
- bioinformatics · cancer-genomics · mutation-analysis · mutational-signatures · somatic-variants
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- SigProfilerMatrixGeneratorbioinformatics · cancer-genomics · mutation-analysis · mutational-signatures · somatic-variants
SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED…
- CANCER_VAR_CALLbioinformatics · cancer-genomics · somatic-variants
End-to-end somatic and germline variant calling pipeline using BWA, GATK HaplotypeCaller, VEP and ANNOVAR for tumor NGS analysis
- OctopuSVcancer-genomics · somatic-variants
Merge and compare structural variants across callers, samples, and platforms. Standardizes BND-heavy output from GRIDSS, SvABA, Sniffles, and more.
- octopusbioinformatics · somatic-variants
Bayesian haplotype-based mutation calling
- Pipelines_Inmegenbioinformatics · somatic-variants
Flujos de trabajos desarrollados y automatizados en el Intituto Nacional de Medicina Genómica para el procesamiento de datos genómicos y transcriptómicos.
- genome-spybioinformatics · cancer-genomics
A visualization grammar and GPU-accelerated toolkit for genomic data
- api.github.com/repos/SigProfilerSuite/SigProfilerExtractorretrieved 2026-08-25 · via github-api
Machine-imported from GitHub search. Last push 2026-08-04, 188 stars, license reported as BSD-2-Clause. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/9.json→ .entries["sigprofilerextractor"]
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