snpkit

Category

Software & Systems

Subcategory

unknown

License

MIT(osi)

Status

dormant

Maturity

deployed

Organization

unknown

Country

unknown

Homepage

alipirani88.github.io/snpkit/

Repository

github.com/alipirani88/snpkit

Documentation

unknown

Tags

bacteria · genomics · ngs · pipeline · snps · variant-calling · vcf

Regulatory

unknown

• alipirani88
• zenalapp

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

• snippybacteria · genomics · snps · variant-calling

  :scissors: :zap: Rapid haploid variant calling and core genome alignment

• cievadgenomics · ngs · snps

  A tool suite for a simple, streamlined and rapid evaluation of variant callsets

• bactmapbacteria · genomics · pipeline

  A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

• snpssnps · vcf

  tools for reading, writing, generating, merging, and remapping SNPs

• indelopegenomics · variant-calling · vcf

  find large indels (in the blind spot between GATK/freebayes and SV callers)

• OctopuSVgenomics · variant-calling · vcf

  Merge and compare structural variants across callers, samples, and platforms. Standardizes BND-heavy output from GRIDSS, SvABA, Sniffles, and more.

1. api.github.com/repos/alipirani88/snpkit
   retrieved 2026-08-05 · via github-api

   Machine-imported from GitHub search. Last push 2024-05-15, 6 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.

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/v1/entries/0.json→ .entries["snpkit"]

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