tidetree
importedsoftware/tidetree
A Bayesian phylogenetic framework to estimate single-cell trees and population dynamic parameters from genetic lineage tracing data
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- GPL-3.0(osi)
- Status
- active
- Maturity
- deployed
- Organization
- unknown
- Country
- unknown
- Homepage
- unknown
- Repository
- github.com/seidels/tidetree
- Documentation
- unknown
- Tags
- bayesian-inference · lineage-tracing · phylogeny · single-cell
- Regulatory
- unknown
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- LAMLlineage-tracing · phylogeny · single-cell
LAML is a maximum likelihood algorithm to infer cell phylogeny from dynamic lineage tracing data
- redeemRlineage-tracing · single-cell
R package for ReDeeM: single-cell Regulatory multi-omics with Deep Mitochondrial mutation profiling.
- bactmapphylogeny
A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
- bam-to-ychr-callsphylogeny
From .bam to .csv with annotated Y-chromosome variants
- ipyradphylogeny
Interactive assembly and analysis of RAD-seq data sets
- BITFAMbayesian-inference · single-cell
BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequencing data. Please see Gao S et al., Genome Research (2021)…
- api.github.com/repos/seidels/tidetreeretrieved 2026-08-25 · via github-api
Machine-imported from GitHub search. Last push 2026-08-15, 7 stars, license reported as GPL-3.0. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/9.json→ .entries["tidetree"]
Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.