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singlecell-variantcalling-pipeline

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software/singlecell-variantcalling-pipeline

This repository provides an end-to-end workflow for variant calling from single-cell RNA-seq data (scRNA-seq) using Cell Ranger, custom Python BAM splitting, and cellsnp-lite. The pipeline works…

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singlecell-variantcalling-pipeline project image
GitHub preview card for YanshengLuo/singlecell-variantcalling-pipeline. Served by its origin, not stored here, and not covered by this registry’s licence.
record
Category
Software & Systems
Subcategory
unknown
License
MIT(osi)
Status
maintained
Maturity
deployed
Organization
unknown
Country
unknown
Homepage
unknown
Repository
github.com/YanshengLuo/singlecell-variantcalling-pipeline
Documentation
unknown
Tags
10x-genomics · cellsnp-lite · single-cell · single-cell-rna-seq · variant-calling
Regulatory
unknown
built by · 1

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similar by tags

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  • alevin-frysingle-cell · single-cell-rna-seq

    🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.

  • AnanseSeuratsingle-cell · single-cell-rna-seq

    Single cell ANANSE Gene-regulatory-network analysis from Seurat objects

sources
  1. api.github.com/repos/YanshengLuo/singlecell-variantcalling-pipeline
    retrieved 2026-08-05 · via github-api

    Machine-imported from GitHub search. Last push 2025-06-05, 3 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.

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