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swarm

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software/swarm

A robust and fast clustering method for amplicon-based studies

Machine-generated from the listed sources and not yet reviewed by a human.

swarm project image
GitHub preview card for torognes/swarm. Served by its origin, not stored here, and not covered by this registry’s licence.
record
Category
Software & Systems
Subcategory
unknown
License
AGPL-3.0(osi)
Status
active
Maturity
deployed
Organization
unknown
Country
unknown
Homepage
unknown
Repository
github.com/torognes/swarm
Documentation
unknown
Tags
bioinformatics · clustering · fasta · metabarcoding · microbiome · sequence
Regulatory
unknown
built by · 6

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

similar by tags

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

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    Versatile open-source tool for microbiome analysis

  • dada2bioinformatics · metabarcoding · microbiome

    Accurate sample inference from amplicon data with single nucleotide resolution

  • seqkitbioinformatics · fasta · sequence

    A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

  • perffasta · sequence

    PERF is an Exhaustive Repeat Finder

  • FooDMebioinformatics · metabarcoding

    A reproducible and scalable snakemake workflow for the analysis of DNA metabarcoding experiments, with a special focus on food and feed samples.

  • Invasive species monitoring based on eDNA multiplex PCR sequencingmetabarcoding

    Invasive species pose a significant threat to global biodiversity and the stability of ecosystems. Although environmental DNA (eDNA)-based quantitative PCR is considered effective, its limited…

sources
  1. api.github.com/repos/torognes/swarm
    retrieved 2026-08-25 · via github-api

    Machine-imported from GitHub search. Last push 2026-08-25, 148 stars, license reported as AGPL-3.0. Category and schematic were assigned by keyword heuristics and are unreviewed.

Not yet verified by a human. Correct this record →

machine-readable

/v1/entries/31.json→ .entries["swarm"]

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