scChromHMM
importedsoftware/scchromhmm
🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- BSD-3-Clause(osi)
- Status
- dormant
- Maturity
- deployed
- Organization
- satijalab
- Country
- unknown
- Homepage
- unknown
- Repository
- github.com/satijalab/scChromHMM
- Documentation
- unknown
- Tags
- chromatin-state · histone-modifications · single-cell
- Regulatory
- unknown
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- chromoformerhistone-modifications
The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)
- ADTnormsingle-cell
ADTnorm normalizes the cell surface protein measurement of CITE-seq data, facilitating across batches and across studies data integration.
- aletschsingle-cell
Assembler for multiple RNA-seq samples
- alevin-frysingle-cell
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
- ALLCoolssingle-cell
Toolkit for single-cell DNA methylation analysis.
- AnanseSeuratsingle-cell
Single cell ANANSE Gene-regulatory-network analysis from Seurat objects
- api.github.com/repos/satijalab/scChromHMMretrieved 2026-08-25 · via github-api
Machine-imported from GitHub search. Last push 2021-09-09, 30 stars, license reported as BSD-3-Clause. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/36.json→ .entries["scchromhmm"]
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