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variant-extractor

imported

software/variant-extractor

Deterministic and standard extractor of SNVs, indels and structural variants (SVs) from VCF files.

Machine-generated from the listed sources and not yet reviewed by a human.

variant-extractor project image
GitHub preview card for EUCANCan/variant-extractor. Served by its origin, not stored here, and not covered by this registry’s licence.
record
Category
Software & Systems
Subcategory
unknown
License
MIT(osi)
Status
active
Maturity
deployed
Organization
EUCANCan
Country
unknown
Homepage
eucancan.github.io/variant-extractor/
Repository
github.com/EUCANCan/variant-extractor
Documentation
unknown
Tags
variant-analysis · variant-calling · vcf
Regulatory
unknown
built by · 2

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

similar by tags

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

  • gnomAD_DBvariant-analysis · vcf

    Scalable SQLite database for fast querying of gnomAD variant annotations (allele frequency, depth, population metrics). Supports gnomAD v2-v4, WGS and WES.

  • vcf_filteringvariant-analysis · variant-calling

    Filter a VCF to discard false positive variants

  • indelopevariant-calling · vcf

    find large indels (in the blind spot between GATK/freebayes and SV callers)

  • OctopuSVvariant-calling · vcf

    Merge and compare structural variants across callers, samples, and platforms. Standardizes BND-heavy output from GRIDSS, SvABA, Sniffles, and more.

  • picovcfvariant-calling · vcf

    Single-header C++ library for fast/low-memory VCF (Variant Call Format) parsing.

  • snpkitvariant-calling · vcf

    Modular workflow for Microbial Variant Calling and SNP diagnostics.

sources
  1. api.github.com/repos/EUCANCan/variant-extractor
    retrieved 2026-08-05 · via github-api

    Machine-imported from GitHub search. Last push 2026-07-09, 7 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.

Not yet verified by a human. Correct this record →

machine-readable

/v1/entries/23.json→ .entries["variant-extractor"]

Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.